Post by Jian Yang on Oct 29, 2015 3:31:22 GMT
We have stopped updating this function for two reasons
1) There are too many different output styles from GenomeStudio (GS). The GCTA function was designed only for one of the styles. The output style also depends on what options that have been used in GS.
2) There is a PLINK plugin in GS that allows us to output the raw genotypes to file in PLINK PED format. Please check with this link support.illumina.com/downloads/plink_input_report_plug-in_v213.html
1) There are too many different output styles from GenomeStudio (GS). The GCTA function was designed only for one of the styles. The output style also depends on what options that have been used in GS.
2) There is a PLINK plugin in GS that allows us to output the raw genotypes to file in PLINK PED format. Please check with this link support.illumina.com/downloads/plink_input_report_plug-in_v213.html