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Post by fayemok on Jan 19, 2016 12:58:57 GMT
It is a question about how to open GCTA in Linux system for a beginner of GCTA.
Why it always shows that there is no command gcta64 when I am trying to use it in the terminal
Is it correct that after I download the zip-file, I open it and try to input in terminal?
Thanks for helping!
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Post by andrewb on Jan 19, 2016 23:16:55 GMT
Once you've unzipped the file you should have an executable 'gcta64' That will only work from the directory you installed it, running ./gcta64If you want to be able to run it anywhere just by typing gcta64, the easiest option is copying it to your ~/bin directory (or maybe ~/usr/local/bin depending on your setup). Alternatively you can just export the directory you unzipped it in, doing something like this stackoverflow.com/questions/10235125/linux-custom-executable-globally-available
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amel
New Member
Posts: 1
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Post by amel on Dec 8, 2017 18:20:02 GMT
Hi. My question is not exactly about the beggining process of the program. I am doing an analysis for bovines and I managed GRM for each of the 29 autosomes separately. The files GMR_chr1.grm.bin, GMR_chr1.grm.N.bin and GMR_chr1.grm.id ... ... ... GMR_chr29.grm.bin, GMR_chr29.grm.N.bin and GMR_chr29.grm.id were generated by the following commands:
gcta64 --bfile GWASfinal --autosome-num 29 --chr 1 --maf 0.05 --make-grm --out GMRh_chr1 --thread-num 10
...
gcta64 --bfile GWASfinal --autosome-num 29 --chr 29 --maf 0.05 --make-grm --out GMRh_chr29 --thread-num 10
But I can not merge these files with the command:
gcta64 --mgrm grm_chrs.txt --make-grm --out GMRhoof
I can not find the file grm_chrs.txt or another similar file. Can you help me? What am I doing wrong?
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Post by Jian Yang on Jan 3, 2018 4:41:09 GMT
You need to write the file grm_chrs.txt by yourself.
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