Post by truls on Apr 21, 2017 11:23:15 GMT
Hello all,
I am still quite new to GCTA.
I've been trying to run the method proposed by Zaitlen et al. (2013 PloS Genetics) with the test-dataset in GCTA (http://gcta.freeforums.net/thread/241/greml-analysis-family-data).
The first command-line seems to be running fine: "gcta64 --bfile test --make-grm --out test"
However, when I try to run the second line (gcta64 --grm test --make-bK --out test_bK 0.05), I get the following message; Error: invalid option "test_bK"
It seems that the "--out" option does not register and I therefore get no mgrm.txt file to run in the REML.
I have tried using several versions of GCTA (1.25.0, 1.26.0, & 1.26.0-1), but I still have the same problem.
Thanks in advance for any help,
Truls
I am still quite new to GCTA.
I've been trying to run the method proposed by Zaitlen et al. (2013 PloS Genetics) with the test-dataset in GCTA (http://gcta.freeforums.net/thread/241/greml-analysis-family-data).
The first command-line seems to be running fine: "gcta64 --bfile test --make-grm --out test"
However, when I try to run the second line (gcta64 --grm test --make-bK --out test_bK 0.05), I get the following message; Error: invalid option "test_bK"
It seems that the "--out" option does not register and I therefore get no mgrm.txt file to run in the REML.
I have tried using several versions of GCTA (1.25.0, 1.26.0, & 1.26.0-1), but I still have the same problem.
Thanks in advance for any help,
Truls
