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Post by fwendt on Apr 25, 2019 21:16:07 GMT
I'm conditioning several trait pairs. For many of the pairs I get an error that there are too many SNPs that have large difference of allele frequency (well over half of the SNPs have a frequency issue). I have tried using allele frequencies from the study sample and those derived from the reference sample but continue to get the error. Any ideas on how to solve this problem?
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