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Post by annyly on Mar 17, 2015 10:21:40 GMT
I am running GCTA with phenotype value for quantitative traits. I had some samples with missing phenotype value for some traits and I would like to exclude these samples in my analysis. I know in plink we could always use --missing-phenotype 99 (we remark the missing value as 99 in phenotype table), how could I do with GCTA to exclude these samples?
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Post by Jian Yang on Mar 18, 2015 2:04:30 GMT
Missing values are represented by NA in the phenotype data file.
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