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Wish to apply no cutoff in GRM

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LarsR
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Wish to apply no cutoff in GRM Apr 15, 2014 16:45:18 GMT

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Post by LarsR on Apr 15, 2014 16:45:18 GMT

I am working on computing GRM per chromosome and would like to retain all observations. If I understand GCTA correctly, "--grm-cutoff 0.025" is applied per default. What should I specify if I want no cut-off (ie include related individuals)?

Best regards,
Lars Ronnegard

Jian Yang Administrator Posts: 362	Wish to apply no cutoff in GRM Apr 16, 2014 10:23:36 GMT Quote Select Post Deselect Post Link to Post Member Give Gift Back to Top Post by Jian Yang on Apr 16, 2014 10:23:36 GMT No, GCTA doesn't apply a cutoff by default.