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Post by anamaria on Sept 2, 2020 18:55:06 GMT
Hello,
I have a case control study (2/1) and I made grm via:
./gcta64 --bfile Merge --make-grm --out Merge
my pheno file looks like this:
0 fam0110_G110 2 0 fam0113_G113 2 0 fam0114_G114 2 0 fam0117_G117 2 0 fam0118_G118 NA 0 fam0119_G119 1 0 fam0124_G124 NA 0 fam0127_G127 2 ...
I am trying to run:
./gcta64 --reml-bivar --reml-bivar-nocove --grm Merge --pheno pheno_test --reml-bivar-lrt-rg 0 --out test
but I am getting: Reading IDs of the GRM from [Merge.grm.id]. 1634 IDs read from [Merge.grm.id]. Reading the GRM from [Merge.grm.bin]. GRM for 1634 individuals are included from [Merge.grm.bin]. Reading phenotypes from [pheno_test]. Error: can not find the 2th trait in the file [pheno_test]. An error occurs, please check the options or data
Can you please tell me how to run this, I am very new to this.
Thanks
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