Post by Mema on Sept 5, 2016 11:29:49 GMT
Hello,
This is my model:
gcta64 --mlma-loco --autosome-num 30 --bfile mydata3 --grm gdata3 --pheno phe.txt --covar fix.txt --mpheno 1 --out GWAS_1_ --thread-num 10
In this GWAS model for disease traits, the observation is binary (disease = 0 / no-disease= 1), so the model should be a generalized linear model with some "link function"?
I mean should i specified one more function for e.g. "logit-link" or the software is automatically analyzing the binary trait?
Best regards
Medhat
This is my model:
gcta64 --mlma-loco --autosome-num 30 --bfile mydata3 --grm gdata3 --pheno phe.txt --covar fix.txt --mpheno 1 --out GWAS_1_ --thread-num 10
In this GWAS model for disease traits, the observation is binary (disease = 0 / no-disease= 1), so the model should be a generalized linear model with some "link function"?
I mean should i specified one more function for e.g. "logit-link" or the software is automatically analyzing the binary trait?
Best regards
Medhat
