vince
New Member
Posts: 6
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Post by vince on Nov 11, 2020 19:10:59 GMT
Hi,
I ran --cond-slct to obtain a list of independent SNPs (.jma.cojo). This analysis also outputs a .cma.cojo file, which from my reading of the documentation is produced when running --cojo-cond with a SNP list. Given that I did not specify a SNP list to the --cojo-slct analysis, what SNPs are used for the conditional analysis that generated the .cma.cojo file?
Thanks,
Vince
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vince
New Member
Posts: 6
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Post by vince on Nov 11, 2020 19:37:00 GMT
In testing it would appear it is the snplist from the .jma.cojo file. The output of --cojo-cond using the snplist from .jma.cojo is identical to the .cma.cojo output from --cojo-slct.
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