Post by kroberts on Nov 15, 2022 18:33:51 GMT
I am running a mlma-loco for horses. I used these flags to run my data:
--mlma-loco
--bfile ClydeGCTA
--autosome-num 31
--pheno BudW.phen.txt
--out BudWGCTAtrial1
Most of my data turned out fine but some of them the effect allele has a 0 instead of an A or B. Does this mean there is something wrong with my data? Or am I not including a need flag?
I also have attached a picture of the way the results look in an excel file.
--mlma-loco
--bfile ClydeGCTA
--autosome-num 31
--pheno BudW.phen.txt
--out BudWGCTAtrial1
Most of my data turned out fine but some of them the effect allele has a 0 instead of an A or B. Does this mean there is something wrong with my data? Or am I not including a need flag?
I also have attached a picture of the way the results look in an excel file.
Attachments:
