|
Post by Jian Yang on Feb 17, 2016 4:06:27 GMT
--bfile test Input PLINK binary PED files, e.g. test.fam, test.bim and test.bed (see PLINK user manual for details). --dosage-mach test.mldose test.mlinfo Input files in MACH output format (uncompressed), e.g. test.mldose and test.mlinfo (see MACH user manual for details). --dosage-mach-gz test.mldose.gz test.mlinfo.gz Input files in MACH output format (compressed), e.g. test.mldose.gz and test.mlinfo.gz.
Formats of the input files test.mldose
001->0011 ML_DOSE 2.000 0.000 0.000 0.000 2.000 0.001 0.028 0.017 1.992 0.027 002->0021 ML_DOSE 2.000 1.000 1.000 1.000 1.999 1.001 1.280 1.010 1.985 1.028 003->0031-000 ML_DOSE 1.036 1.132 1.000 2.000 1.003 1.999 0.986 1.013 1.030 1.984 ...
test.mlinfo
SNP Al1 Al2 Freq1 MAF Quality Rsq rs1 G T 0.8633 0.1367 0.9595 0.8697 rs2 C T 0.4654 0.4654 0.9702 0.9543 rs3 G T 0.4459 0.4459 0.9997 0.9995 ...
Note: the --dosage-mach option was designed to read output files from an early version of MACH, which might not be compatible with output files from the latest version of MACH or Minimac.
--out test Specify output root filename.
|
|