Post by ilanac on Feb 23, 2021 13:28:08 GMT
Hello,
I'm new to the use of GCTA and I'm facing a problem.
I have .dose and .info file that I need to filter (with MAF and Rsq).
I'm using the command bellow :
./gcta64 --dosage-mach file.dose file.info --maf 0.05 --imput-rsq 0.7 --out data_filtered
My problem is that this line gives me a .log output and I need a .dose and .info files with my filtered data as an output.
Would anyone know how to get an output in .dose and .info format ?
Thank you very much for your help,
Ilana
I'm new to the use of GCTA and I'm facing a problem.
I have .dose and .info file that I need to filter (with MAF and Rsq).
I'm using the command bellow :
./gcta64 --dosage-mach file.dose file.info --maf 0.05 --imput-rsq 0.7 --out data_filtered
My problem is that this line gives me a .log output and I need a .dose and .info files with my filtered data as an output.
Would anyone know how to get an output in .dose and .info format ?
Thank you very much for your help,
Ilana