Post by ayeepi on Jan 26, 2022 15:45:25 GMT
I am trying to create GRM using gcta64. I am making them from plink format data. bim/bed/fam files. However I want to only make the grm from certain samples within this data. I have a list of the IDs in a .txt file. I specify them in the command using --keep.
```
gcta64 --bfile /data --maf 0.01 --keep /included_sample.txt --make-grm --out /cleaned_maf_0_01_white
```
However when I run the command above I get the error
```
Error: the subject list file [/included_sample.txt], line 1 has elements less than 2
An error occurs, please check the options or data
```
These samples are in that data and the top line is not empty, it just lists the IDs. I've also ordered them as tab and space delimited and get the same error. Are there any suggestions of what I'm doing wrong?
Thank you!
```
gcta64 --bfile /data --maf 0.01 --keep /included_sample.txt --make-grm --out /cleaned_maf_0_01_white
```
However when I run the command above I get the error
```
Error: the subject list file [/included_sample.txt], line 1 has elements less than 2
An error occurs, please check the options or data
```
These samples are in that data and the top line is not empty, it just lists the IDs. I've also ordered them as tab and space delimited and get the same error. Are there any suggestions of what I'm doing wrong?
Thank you!