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Post by vivian on Mar 14, 2022 17:24:42 GMT
Hello,
I'm running GCTA REML on genetic data that I simulated with msprime. For every locus I am creating a GRM and then testing it for association with random phenotypes, in order to see the distribution of the p-values under a Null simulation. I noticed that the p-values < 0.5 seem to be distributed uniformly, as expected, but that there are no p-values > 0.5. Is there a cap on the p-values in GCTA?
Thank you for your help!
Vivian
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