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Post by jianqiao on May 22, 2022 22:28:47 GMT
I am using cojo function for stepwise selection of conditional independent associations. I notice that the sample size in the output files is not integer.
Chr SNP bp refA freq b se p n freq_geno bJ bJ_se pJ LD_r 1 1:169484767:A:G 169484767 G 0.0467013 -0.662389 0.0892837 1.18075e-13 1323.1 0.0470022 -0.662389 0.0910888 3.54455e-13 0 19 19:15587185:C:T 15587185 T 0.387491 -0.218492 0.0385671 1.46816e-08 1353.34 0.387491 -0.218492 0.0390077 2.12799e-08 0
I expect the sample size should be same for every variant. Does anyone know what is happening there?
Thanks
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