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Post by mmuniz on Jul 21, 2022 15:44:43 GMT
Hi,
I am trying to run a --fastGWA-mlm-binary for a dataset of 292 individuals and 48026 SNPs. I don`t have a pedigree so I am running the lines:
gcta64 --bfile geno --make-grm --thread-num 10 --out geno_grm
gcta64 --grm geno_grm --make-bK-sparse 0.05 --out sp_grm to create the sparse GRM, which is running perfectly and saving GRM sparse (2170 pairs) to [sp_grm.grm.sp], but when I try to run the --fastGWA-mlm-binary, by to following line:
gcta64 --bfile ./geno --grm-sparse ./sp_grm --fastGWA-mlm --covar ./covar_lactation_farm_season --pheno ./pheno_code_0_1 --thread-num 10 --out glmm_assoc, i have the following output:
#######################################
Analysis started at 14:14:13 EDT on Wed Jul 06 2022.
Hostname: XXX
Accepted Options:
--bfile geno
--make-grm
Error:
invalid option "--sparse-cutoff".
An error occurs, please check the options or data.
##################################################################
I would like to understand why I am having this problem and how to solve this problem. I appreciate any help.
Thanks in advance,
Maria
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